The bacterial etiology and antimicrobial susceptibility of lower respiratory tract infections in Vietnam.

Dung TTN., Vinh C., Anh PH., Linh VKP., Tuyen HT., Tam PT., Lan NPH., Phu TT., Tuyet NSM., Nhung PH., Trang VD., Van NT., Nguyen Q., Thanh NT., Kesteman T., van Doorn HR., Thwaites G., Duy PT.

BackgroundLower respiratory tract infection (LRTI) remains the leading infectious cause of morbidity and mortality globally. Key bacterial pathogens include Acinetobacter baumannii, Pseudomonas aeruginosa, Klebsiella pneumoniae, Escherichia coli, Staphylococcus aureus and Streptococcus pneumoniae. This study examined the prevalence and antimicrobial resistance patterns of major bacterial pathogens from community- and hospital-acquired LRTIs across six major hospitals in Vietnam.MethodsBetween January 2022 and May 2023, 1000 bacterial isolates were collected through an isolate-based surveillance. Species identification and antimicrobial susceptibility testing were performed by VITEK-2/Phoenix M50, with MICs determined by E-test or broth microdilution. Multiplex PCRs were used to detect common AMR genes.ResultsA. baumannii (49.6%), P. aeruginosa (21%), K. pneumoniae (18.6%) were predominant, followed by S. aureus (6.7%), E. coli (3.9%) and S. pneumoniae (0.2%). Most isolates (94.4%) were identified from hospital-acquired cases. High prevalence of MDR and carbapenem resistance were identified in A. baumannii (96% and 95%), P. aeruginosa (56.7% and 57.1%), and K. pneumoniae (78% and 69.2%), respectively. Notably, resistance to ceftazidime-avibactam was detected in K. pneumoniae (34.3%), P. aeruginosa (29%), and E. coli (7.7%), while colistin resistance was found in K. pneumoniae (18.2%) and A. baumannii (2.8%). MRSA prevalence was 79.1%, though S. aureus remained susceptible to vancomycin, linezolid and ceftaroline. Most blaNDM-positive K. pneumoniae (62/71, 87.3%), E. coli (2/2, 100%), and P. aeruginosa (23/25, 85.2%) showed resistance to ceftazidime-avibactam. Whole genome sequencing revealed that the blaNDM-positive but ceftazidime-avibactam susceptible isolates (9 K. pneumoniae and 2 P. aeruginosa) carried truncated blaNDM. Overall, ceftazidime-avibactam was effective against K. pneumoniae, E. coli, and P. aeruginosa isolates carrying ESBL, ESBL and blaOXA-48, or ESBL and blaKPC. Alternatively, no detectable AMR genes were found in 35 ceftazidime-avibactam resistant P. aeruginosa isolates.ConclusionsCarbapenem-resistant Gram-negative pathogens were predominant among hospital-acquired LRTIs in Vietnam, with notable resistance to ceftazidime-avibactam and colistin. The lack of effective treatment for A. baumannii remains a major concern. We found a strong correlation between AMR phenotype and genotype among K. pneumoniae and E. coli, supporting gene-based therapy to guide ceftazidime-avibactam use. However, the presence of disrupted blaNDM underscores the need to re-evaluate commercial PCR assays for carbapenemase detection.

DOI

10.1186/s12941-025-00818-3

Type

Journal article

Publication Date

2025-08-01T00:00:00+00:00

Volume

24

Addresses

Molecular Epidemiology Group, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.

Keywords

Humans, Bacteria, Cross Infection, Respiratory Tract Infections, Anti-Bacterial Agents, Microbial Sensitivity Tests, Prevalence, Drug Resistance, Bacterial, Drug Resistance, Multiple, Bacterial, Vietnam, Male

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