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We report on infection patterns in 5 households (78 participants) delineating the natural history of human rhinovirus (HRV). Nasopharyngeal collections were obtained every 3-4 days irrespective of symptoms, over a 6-month period, with molecular screening for HRV and typing by sequencing VP4/VP2 junction. Overall, 311/3468 (8.9%) collections were HRV positive: 256 were classified into 3 species: 104 (40.6%) HRV-A; 14 (5.5%) HRV-B, and 138 (53.9%) HRV-C. Twenty-six known HRV types (13 HRV-A, 3 HRV-B, and 10 HRV-C) were identified (A75, C1, and C35 being most frequent). We observed continuous invasion and temporal clustering of HRV types in households (range 5-13 over 6 months). Intrahousehold transmission was independent of clinical status but influenced by age. Most (89.0%) of HRV infection episodes were limited to <14 days. Individual repeat infections were frequent (range 1-7 over 6 months), decreasing with age, and almost invariably heterotypic, indicative of lasting type-specific immunity and low cross-type protection.

Original publication

DOI

10.1093/infdis/jiy621

Type

Journal

The Journal of infectious diseases

Publication Date

03/2019

Volume

219

Pages

1049 - 1057

Addresses

Epidemiology and Demography Department, Kenya Medical Research Institute - Wellcome Trust Research Programme, Kilifi.

Keywords

Nasopharynx, Humans, Rhinovirus, Picornaviridae Infections, Common Cold, Recurrence, Prospective Studies, Family Characteristics, Age Factors, Time Factors, Adolescent, Adult, Child, Child, Preschool, Infant, Kenya, Young Adult, Real-Time Polymerase Chain Reaction