Professor Anthony Scott
Contact information
Research groups
Anthony Scott
Visiting Professor of Vaccinology
Invasive Bacterial Diseases
Anthony Scott is based in Kilifi, Kenya, where he leads a group focused on invasive bacterial diseases of children. His interests lie in the evaluation of vaccines, particularly against Hib and the pneumococcus; the epidemiology of invasive bacterial infections and their interaction with malaria: the transmission of Streptococcus pneumoniae among children in Kenya; host susceptibility to pneumococcal disease; the aetiology of pneumonia in children; and the social and epidemiological determinants of mortality in children. He is the co-director, with Tom Williams, of the Kilifi Health and Demographic Surveillance System (KHDSS), a population-based surveillance of vital events and migration among 250,000 people linked to morbidity surveillance Kilifi District Hospital.
Anthony works closely with the Ministry of Health in Kenya providing disease burden, vaccine effectiveness, and cost effectiveness data to inform vaccine policy decisions. Current vaccine trials involve (a) a Fractional dose study of PCV10 and PCV13 (b) first use of a GMMA bivalent vaccine against non-typhoidal Salmonella. He also works on serosurveillance for SARS-CoV-2 and the vaccine effectiveness of COVID vaccines.
Beyond Kenya, he directs the Ethiopia site for the CHAMPS project – a study of post-mortem biopsy tissue to determine cause of death in children and works in Nigeria, Ethiopia and DRC on the use of pneumococcal carriage studies and mathematical modelling to inform Pneumococcal conjugate vaccine policy.
Recent publications
The age-specific concentrations and seroprevalence of antibodies against Salmonella Enteritidis (O:9) and Salmonella Typhimurium (O:4,5) across three sites in Kenya.
Journal article
Muthumbi EM. et al, (2026), The Journal of infectious diseases
The effect of a 5-day course of azithromycin on Streptococcus pneumoniae carriage and antimicrobial resistance among Kenyan children discharged from hospital.
Journal article
Libby TE. et al, (2026), The Journal of infectious diseases
Comparative performance of the InBios SCoV-2 DetectTM IgG ELISA and the in-house KWTRP ELISA in detecting SARS-CoV-2 spike IgG antibodies in Kenyan populations
Journal article
Kutima B. et al, (2025), Wellcome Open Research, 9, 349 - 349
Investigating the role of cytomegalovirus as a cause of stillbirths and child deaths in low and middle-income countries through postmortem minimally invasive tissue sampling.
Journal article
Velaphi S. et al, (2025), Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Active vaccine safety surveillance: Experience from a prospective cohort event monitoring study of COVID-19 vaccines in Kenya.
Journal article
Odhiambo DB. et al, (2025), PLOS global public health, 5