Recent publications by Researchers affiliated with the Centre for Tropical Medicine and Global Health
Endemic chikungunya fever in Kenyan children: a prospective cohort study.
Nyamwaya DK. et al, (2021), BMC infectious diseases, 21
The utility of Escherichia coli as a contamination indicator for rural drinking water: Evidence from whole genome sequencing
Nowicki S. et al, (2021), PLOS ONE, 16, e0245910 - e0245910
Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season
Nyasimi FM. et al, (2020), Virus Evolution, 6
Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.
Agoti CN. et al, (2019), Scientific reports, 9
Exploring Plasmodium falciparum Var Gene Expression to Assess Host Selection Pressure on Parasites During Infancy.
Kivisi CA. et al, (2019), Frontiers in immunology, 10
Scalable Workflows and Reproducible Data Analysis for Genomics.
Strozzi F. et al, (2019), Methods in molecular biology (Clifton, N.J.), 1910, 723 - 745
Evaluating the performance of tools used to call minority variants from whole genome short-read data
Said Mohammed K. et al, (2018), Wellcome Open Research, 3, 21 - 21
Assessing the utility of minority variant composition in elucidating RSV transmission pathways
Githinji G. et al, (2018)
Evaluating the performance of tools used to call minority variants from whole genome short-read data
Said Mohammed K. et al, (2018), Wellcome Open Research, 3, 21 - 21
Journal of Open Source Software (JOSS): design and first-year review
Smith AM. et al, (2018), PeerJ Computer Science, 4, e147 - e147
Evaluating the performance of tools used to call minority variants from whole genome short-read data.
Said Mohammed K. et al, (2018), Wellcome open research, 3
A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections
Githinji G. and Bull PC., (2017), Wellcome Open Research, 2, 86 - 86
A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis
Agoti CN. et al, (2017), Virus Evolution, 3
A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks
Githinji G. et al, (2017), Virus Evolution, 3
Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis
Agoti CN. et al, (2017), Virus Evolution, 3
Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis
Attardo GM. et al, (2014), Science, 344, 380 - 386
Prognostic Indicators of Life-Threatening Malaria Are Associated with Distinct Parasite Variant Antigen Profiles
Warimwe GM. et al, (2012), Science Translational Medicine, 4, 129ra45 - 129ra45
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics
Bonnal RJP. et al, (2012), Bioinformatics, 28, 1035 - 1037