Recent publications by Researchers affiliated with the Centre for Tropical Medicine and Global Health
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues.
Meehan CJ. et al, (2019), Nature reviews. Microbiology, 17, 533 - 545
Three phylogenetic groups have driven the recent population expansion of Cryptococcus neoformans
Ashton PM. et al, (2019), Nature Communications, 10
Epidemiological analysis of Salmonella clusters identified by whole genome sequencing, England and Wales 2014
Waldram A. et al, (2018), Food Microbiology, 71, 39 - 45
Whole genome sequencing reveals an outbreak of Salmonella Enteritidis associated with reptile feeder mice in the United Kingdom, 2012-2015
Kanagarajah S. et al, (2018), Food Microbiology, 71, 32 - 38
Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
Ashton PM. et al, (2017), Genome Medicine, 9
Comparative genomics of Cryptococcus neoformans var. grubii associated with meningitis in HIV infected and uninfected patients in Vietnam
Day JN. et al, (2017), PLOS Neglected Tropical Diseases, 11, e0005628 - e0005628
Multinational outbreak of travel-related Salmonella Chester infections in Europe, summers 2014 and 2015
Fonteneau L. et al, (2017), Eurosurveillance, 22
Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis
INNS T. et al, (2017), Epidemiology and Infection, 145, 289 - 298
WGS for surveillance of antimicrobial resistance: a pilot study to detect the prevalence and mechanism of resistance to azithromycin in a UK population of non-typhoidalSalmonella
Nair S. et al, (2016), Journal of Antimicrobial Chemotherapy, 71, 3400 - 3408
Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network
Dallman T. et al, (2016), Microbial Genomics, 2
MOST: a modified MLST typing tool based on short read sequencing
Tewolde R. et al, (2016), PeerJ, 4, e2308 - e2308
Detection of the plasmid-mediatedmcr-1gene conferring colistin resistance in human and food isolates ofSalmonella entericaandEscherichia coliin England and Wales
Doumith M. et al, (2016), Journal of Antimicrobial Chemotherapy, 71, 2300 - 2305
Evaluation of Molecular Methods for Serotyping Shigella flexneri
Gentle A. et al, (2016), Journal of Clinical Microbiology, 54, 1456 - 1461
Identification ofSalmonellafor public health surveillance using whole genome sequencing
Ashton PM. et al, (2016), PeerJ, 4, e1752 - e1752
Association between use of proton pump inhibitors and non-typhoidal salmonellosis identified following investigation into an outbreak of Salmonella Mikawasima in the UK, 2013
FREEMAN R. et al, (2016), Epidemiology and Infection, 144, 968 - 975
Whole Genome Sequencing for Public Health Surveillance of Shiga Toxin-Producing Escherichia coli Other than Serogroup O157
Chattaway MA. et al, (2016), Frontiers in Microbiology, 7
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
Quick J. et al, (2015), Genome Biology, 16
Whole Genome Sequencing demonstrates that Geographic Variation of Escherichia coli O157 Genotypes Dominates Host Association
Strachan NJC. et al, (2015), Scientific Reports, 5
Applying phylogenomics to understand the emergence of Shiga-toxin-producing Escherichia coli O157:H7 strains causing severe human disease in the UK
Dallman TJ. et al, (2015), Microbial Genomics, 1
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study
Baker KS. et al, (2015), The Lancet Infectious Diseases, 15, 913 - 921